CRISPR Gene Regulation

CRISPR Activation & Repression

Modulate endogenous gene expression without introducing DNA double-strand breaks. Use dCas9-VPR for transcriptional activation, dCas9-KRAB for transcriptional repression, or epigenetic dCas9 effectors for targeted DNA demethylation or methylation.

1

Activate Gene Expression with dCas9-VPR

CRISPRa • Activation

dCas9-VPR combines catalytically inactive Cas9 with the VP64, p65 and Rta transcriptional activator domains. A promoter-targeting sgRNA directs the complex near the transcriptional start site (TSS), where VPR recruits transcriptional machinery to increase expression from the endogenous gene locus.

dCas9-VPR CRISPR activation mechanism showing targeting upstream of the TSS
CRISPRa dCas9-VPR Lentiviral VectorK097
10 µg
View Vector
CRISPRa dCas9-VPR LentivirusK098
Packaged lentivirus
View Virus
  • Activates the endogenous gene rather than expressing a separate ORF
  • No DNA double-strand break
  • Useful for gain-of-function studies, pathway activation and functional genomics
  • Compatible with abm promoter-targeting CRISPRa sgRNAs
3

Want to Repress Gene Expression Instead?

CRISPR interference (CRISPRi) uses catalytically inactive Cas9 fused to the KRAB transcriptional repressor domain. A guide RNA directs dCas9-KRAB to the promoter/TSS region, where KRAB recruits repressive chromatin machinery and reduces transcription without cleaving the DNA.

Typical CRISPRi targeting region: approximately −50 to +300 bp relative to the TSS. abm CRISPRa sgRNAs may also be used with dCas9-KRAB when appropriately positioned near the TSS. For CRISPRi-specific targeting, custom sgRNA design is also available.
dCas9-KRAB CRISPRi mechanism showing guide targeting around the TSS
dCas9-KRAB Lentiviral VectorK203
10 µg
View Vector
dCas9-KRAB LentivirusK204
Packaged lentivirus
View Virus
4

Want Epigenetic Up- or Down-Regulation?

dCas9 can also be fused to epigenetic effector domains to modify DNA methylation at a selected locus without introducing a double-strand break. dCas9-TET1CD promotes targeted DNA demethylation, while dCas9-DNMT3A promotes targeted DNA methylation. Because these applications depend on the specific regulatory or methylation-sensitive region being studied, custom sgRNA design is recommended.

dCas9-TET1CD — Targeted DNA Demethylation

TET1CD recruits the catalytic domain of TET1 to a selected genomic region to promote DNA demethylation, which can relieve methylation-associated transcriptional repression and support epigenetic gene activation studies.

dCas9-TET1CD targeted DNA demethylation mechanism

dCas9-DNMT3A — Targeted DNA Methylation

DNMT3A recruits DNA methyltransferase activity to a selected genomic region to promote locus-specific DNA methylation and investigate epigenetic transcriptional repression.

dCas9-DNMT3A targeted DNA methylation mechanism

Top Publications

01

Inferring and perturbing cell fate regulomes in human brain organoids.

Fleck JS. et al.
Nature (2022)

doi: 10.1038/s41586-022-05279-8
02

Gangliosides are essential endosomal receptors for quasi-enveloped and naked hepatitis A virus.

Das A. et al.
Nature Microbiology (2020)

doi: 10.1038/s41564-020-0727-8
03

Basal expression of interferon regulatory factor 1 drives intrinsic hepatocyte resistance to multiple RNA viruses.

Yamane D. et al.
Nature Microbiology (2019)

doi: 10.1038/s41564-019-0425-6

FAQs

What are CRISPR Activation vectors and how do they work?
These constructs are lentiviral vectors that express promoter-targeting sgRNAs for CRISPR activation. When combined with dCas9-VPR, they mediate targeted gene activation by recruiting transcriptional activators. Some promoter-targeting CRISPRa sgRNAs may also be used with dCas9-KRAB for repression when appropriately positioned near the TSS; custom sgRNA design is available for CRISPRi-specific targeting.
What type of Cas9 is compatible with the CRISPR Activation vectors?
We recommend using dCas9-VPR for gene activation experiments and dCas9-KRAB for gene repression experiments.
How does CRISPR activation differ from traditional CRISPR-Cas9 editing?
Unlike CRISPR-Cas9, which introduces permanent DNA double-strand breaks, CRISPRa modulates gene expression by recruiting transcriptional activators to promoter or enhancer regions, leaving the genome unchanged.
How long does gene activation last when using CRISPR activation vectors?
Gene activation is generally transient when CRISPRa components are delivered episomally, but longer-term activation can be achieved using viral delivery systems or stable cell line generation.
CRISPR gene regulation support

Need help choosing a CRISPR activation, repression, or epigenetic product?

Tell us your target gene, species, cell type, and desired direction of regulation. Our technical team can help identify the right dCas9 effector and sgRNA design strategy, or discuss a custom sgRNA vector or virus.